PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1130_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 93aa    MW: 10622.9 Da    PI: 9.3968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1130_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-1021611554
                HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
         HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                +iN+ + +L++llP++  + +s K+s a +L+++++YI++L
  RrC1130_p1 21 QINDLIIKLQQLLPELRdSRRSDKVSAARVLQETCNYIRNL 61
                8**************55599*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.903661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00281667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-92080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-52065No hitNo description
SuperFamilySSF474591.31E-102080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-72161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSGRRSRSRQ SSGTSRISEE QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQETCNYIRN  60
LHREVDDLSE RLSELLANTD TAQAALIRSL LTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273951e-118AK227395.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-05-N07.
GenBankAY0882861e-118AY088286.1 Arabidopsis thaliana clone 519 mRNA, complete sequence.
GenBankBT0030461e-118BT003046.1 Arabidopsis thaliana At1g74500 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681754.12e-57PREDICTED: transcription factor PRE3-like
RefseqXP_013591036.12e-57PREDICTED: transcription factor PRE3-like
SwissprotQ9CA642e-47PRE3_ARATH; Transcription factor PRE3
TrEMBLA0A087HID92e-58A0A087HID9_ARAAL; Uncharacterized protein
STRINGBra003797.1-P8e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.16e-47activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1